Research

Microarray-based gene expression profiling and DNA copy number variation analysis of temporal fossa arachnoid cysts

Mads Aarhus^1,2,4 , Christian A Helland^2,3 , Morten Lund-Johansen^2,3 , Knut Wester^2,3 and Per M Knappskog^1,4

¹  Centre for Medical Genetics and Molecular Medicine, Haukeland University Hospital, NO-5021 Bergen, Norway

²  Department of Surgical Sciences, University of Bergen, NO-5021 Bergen, Norway

³  Department of Neurosurgery, Haukeland University Hospital, NO-5021 Bergen, Norway

⁴  Department of Clinical Medicine, University of Bergen, NO-5021 Bergen, Norway

author email corresponding author email

Cerebrospinal Fluid Research 2010, 7:6doi:10.1186/1743-8454-7-6

Published:	26 February 2010

Abstract

Background

Intracranial arachnoid cysts (AC) are membranous sacs filled with CSF-like fluid that are commonly found in the temporal fossa. The majority of ACs are congenital. Typical symptoms are headache, dizziness, and dyscognition. Little is known about genes that contribute to the formation of the cyst membranes.

Methods

In order to identify differences in gene expression between normal arachnoid membrane (AM) and cyst membrane, we have performed a high-resolution mRNA microarray analysis. In addition we have screened DNA from AC samples for chromosomal duplications or deletions using DNA microarray-based copy number variation analysis.

Results

The transcriptome consisting of 33096 gene probes showed a near-complete similarity in expression between AC and AM samples. Only nine genes differed in expression between the two tissues: ASGR1, DPEP2, SOX9, SHROOM3, A2BP1, ATP10D, TRIML1, NMU were down regulated, whereas BEND5 was up regulated in the AC samples. Three of the AC samples had unreported human DNA copy number variations, all DNA gains.

Conclusions

Extending results of previous anatomical studies, the present study has identified a small subset of differentially expressed genes and DNA alterations in arachnoid cysts compared to normal arachnoid membrane.